Don Bosco School Boko is formally affiliated with the Assam Higher Secondary Education Council (AHSEC) as well as the Assam Board of Secondary Education (SEBA). This means that the school provides instruction and conducts examinations as per the standards and syllabus mandated by these two prominent state-level education boards in Assam. The affiliation ensures that students of Don Bosco School Boko receive recognized certification upon completion of their Class 10 (SEBA) and Class 12 (AHSEC) studies, granting them eligibility for higher studies and professional courses across the state and country.

Managed by the Salesians of Don Bosco, the institution is committed to providing holistic education that integrates academic excellence with value-based formation, following the Preventive System of Don Bosco. The dual affiliation to AHSEC and SEBA allows the school to offer a comprehensive curriculum from the lower grades through higher secondary, catering to the educational needs of students in Boko and the surrounding region. Recognition from these authoritative bodies not only enhances the credibility of the school but also ensures its compliance with prescribed educational standards and regular inspections.